schiff, branch HEAD

Write the 0.3.1 release note

2017-11-06T10:57:37Z

commit 050eda4e4cff99a4496c35b8a5de6b03fca0f847 parent c959f4261f86c8686845d9164a021115e19815e7 Author: Vincent Forest Date: Mon, 6 Nov 2017 11:57:37 +0100 Write the 0.3.1 release note

Bump version number to 0.3.1

2017-11-06T10:55:29Z

commit c959f4261f86c8686845d9164a021115e19815e7 parent deb5fd54308b6bf52a013329703eb6265b744b4a Author: Vincent Forest Date: Mon, 6 Nov 2017 11:55:29 +0100 Bump version number to 0.3.1

Fix some typos in the man pages

2017-11-06T10:53:47Z

commit deb5fd54308b6bf52a013329703eb6265b744b4a parent f7c6f370cfc64cccfe5321a5fd03e9312a769c60 Author: Vincent Forest Date: Mon, 6 Nov 2017 11:53:47 +0100 Fix some typos in the man pages

Reformat the man pages

2017-10-24T14:48:45Z

commit f7c6f370cfc64cccfe5321a5fd03e9312a769c60 parent 92ff34973acb72b330352ed3db364ee1ac12f2e6 Author: Vincent Forest Date: Tue, 24 Oct 2017 16:48:45 +0200 Reformat the man pages

Fix a critical issue in the helical pipe distribution

2016-05-19T10:33:54Z

commit 92ff34973acb72b330352ed3db364ee1ac12f2e6 parent bc5f9d5ede084192f79a4cceb38ceb06ecbad4ec Author: Vincent Forest Date: Thu, 19 May 2016 12:33:54 +0200 Fix a critical issue in the helical pipe distribution Due to thread concurrency, the sampled helical pipe shape were totally wrong. From now, the helical pipe mesh contains the shape indices only. The buffer of the shape vertices is no more defined in the mesh. It is locally created at runtime in the "geometry_sample" routine in order to ensure that each thread write to its own vertex buffer.

Update the install directory of the documentation

2016-04-29T07:26:21Z

commit bc5f9d5ede084192f79a4cceb38ceb06ecbad4ec parent 51f57fdd1fd137b594c28651a9a2d6da27f8d135 Author: Vincent Forest Date: Fri, 29 Apr 2016 09:26:21 +0200 Update the install directory of the documentation

Fix a misspelling in the schiff-output fileformat

2016-04-08T13:12:57Z

commit 51f57fdd1fd137b594c28651a9a2d6da27f8d135 parent 0769fc3cbfb226a52c1d57a701b35b22bc0de9f2 Author: Vincent Forest Date: Fri, 8 Apr 2016 15:12:57 +0200 Fix a misspelling in the schiff-output fileformat

Update the schiff-geometry documentation

2016-04-06T14:27:37Z

commit 0769fc3cbfb226a52c1d57a701b35b22bc0de9f2 parent d7664dc5eddafad289885d973f91feccc9e89204 Author: Vincent Forest Date: Wed, 6 Apr 2016 16:27:37 +0200 Update the schiff-geometry documentation Take into account the new "equivalent sphere" format. Add some examples.

Fix memory leaks on parsing error

2016-04-06T09:52:00Z

commit d7664dc5eddafad289885d973f91feccc9e89204 parent 6ea4d621d7292919597b79382b21ea846e7abbed Author: Vincent Forest Date: Wed, 6 Apr 2016 11:52:00 +0200 Fix memory leaks on parsing error A memory leak occurred when an error is detected during the parsing of a geometry with an histogram distribution of at least one of its parameter. The geometry type is now setup at the beginning of its parsing in order to correctly release its attribute when an error occurs.

Upd the cylinder test to handle the YAML fileformat updates

2016-04-06T08:30:46Z

commit 6ea4d621d7292919597b79382b21ea846e7abbed parent 684c105d47317bce6b24d432af0c5a8c881fb1e3 Author: Vincent Forest Date: Wed, 6 Apr 2016 10:30:46 +0200 Upd the cylinder test to handle the YAML fileformat updates

Handle the Star-Schiff volume scaling attribute

2016-04-05T14:31:08Z

commit 684c105d47317bce6b24d432af0c5a8c881fb1e3 parent 6d287ab6e6b945496cfe75bc563118824d1ab106 Author: Vincent Forest Date: Tue, 5 Apr 2016 16:31:08 +0200 Handle the Star-Schiff volume scaling attribute The equivalent sphere distributions rely on the volume scaling attribute of the geometry distribution. Change the YAML file format to declare an equivalent sphere distribution of the cylinder, and the ellipsoid. Add the equivalent sphere distribution for the helical pipe and the supershape.

Fix a minor "uninitialised variable" warning

2016-04-01T09:39:37Z

commit 6d287ab6e6b945496cfe75bc563118824d1ab106 parent 38e0e849e135c98d4723a2c6505a03e9307edd0e Author: Vincent Forest Date: Fri, 1 Apr 2016 11:39:37 +0200 Fix a minor "uninitialised variable" warning

Fix typo in the README file

2016-03-30T13:14:00Z

commit 38e0e849e135c98d4723a2c6505a03e9307edd0e parent 8c34e89ec1879221d1ba1aa66f38d549f6751290 Author: Vincent Forest Date: Wed, 30 Mar 2016 15:14:00 +0200 Fix typo in the README file

Update the README file

2016-03-30T13:12:02Z

commit 8c34e89ec1879221d1ba1aa66f38d549f6751290 parent e4ebf17030fc4f16c93101c3b097db47582e0d83 Author: Vincent Forest Date: Wed, 30 Mar 2016 15:12:02 +0200 Update the README file

Fix the year of the Charon et al. publication

2016-03-30T12:55:17Z

commit e4ebf17030fc4f16c93101c3b097db47582e0d83 parent 9f5f3f99b41fddd8704eebbb8f2ace783f4ed0e0 Author: Vincent Forest Date: Wed, 30 Mar 2016 14:55:17 +0200 Fix the year of the Charon et al. publication

Replace the relative refractive indices

2016-03-30T09:45:33Z

commit 9f5f3f99b41fddd8704eebbb8f2ace783f4ed0e0 parent fe8167d2270ca06da4aa6cce9ac2080eebcf25ba Author: Vincent Forest Date: Wed, 30 Mar 2016 11:45:33 +0200 Replace the relative refractive indices The submitted relative refractive indices must be absolute and no more relative to the medium.

Improve the efficiency of the test cylinder script

2016-03-30T09:15:04Z

commit fe8167d2270ca06da4aa6cce9ac2080eebcf25ba parent c752b0f60cd9e760bc9c24a76082a0da8a71fe36 Author: Vincent Forest Date: Wed, 30 Mar 2016 11:15:04 +0200 Improve the efficiency of the test cylinder script

Fix the test_schiff bash scripts

2016-03-30T08:49:12Z

commit c752b0f60cd9e760bc9c24a76082a0da8a71fe36 parent 589b7e6ed937fa8f080d0b0d11a3f85ff3856717 Author: Vincent Forest Date: Wed, 30 Mar 2016 10:49:12 +0200 Fix the test_schiff bash scripts Handle update of the schiff-output format

Fix a misspelling in the schiff-output man page

2016-03-29T19:18:27Z

commit 589b7e6ed937fa8f080d0b0d11a3f85ff3856717 parent 8eda9773edad2bc81055c2c02b23d81d745a4ff0 Author: Vincent Forest Date: Tue, 29 Mar 2016 21:18:27 +0200 Fix a misspelling in the schiff-output man page

Update the help message of the schiff command

2016-03-29T14:18:50Z

commit 8eda9773edad2bc81055c2c02b23d81d745a4ff0 parent 1365d1470addb6947bec5c757032f1d7daebf103 Author: Vincent Forest Date: Tue, 29 Mar 2016 16:18:50 +0200 Update the help message of the schiff command

Major update of the schiff-output documentation

2016-03-29T13:52:03Z

commit 1365d1470addb6947bec5c757032f1d7daebf103 parent 747d6686186a368619dbf1313e0e9bf047b6b6a0 Author: Vincent Forest Date: Tue, 29 Mar 2016 15:52:03 +0200 Major update of the schiff-output documentation Take into account the data layout of the schiff output (phase function, cumulative, phase function descriptors, etc.)

Major update of the schiff output

2016-03-29T10:11:12Z

commit 747d6686186a368619dbf1313e0e9bf047b6b6a0 parent 900372082fa4dc19fd75d7d76078cf57df796dc6 Author: Vincent Forest Date: Tue, 29 Mar 2016 12:11:12 +0200 Major update of the schiff output Write the cross sections, the phase function descriptors, the phase functions, the cumulative phase functions and the inverse cumulative phase functions. The [[inverse] cumulative] phase functions are preceded by their associated value (an angle or a probability for the inverse cumulative).

Update the schiff documentation

2016-03-28T18:54:47Z

commit 900372082fa4dc19fd75d7d76078cf57df796dc6 parent 279862edbd47adcf7278314d8fc10bff014bbbe7 Author: Vincent Forest Date: Mon, 28 Mar 2016 20:54:47 +0200 Update the schiff documentation Fix misspellings in the schiff-geometry man page. Slight improvements of the schiff program description. Improve the documentation of the characteristic length option.

Document the helical_pipe geometry

2016-03-28T16:11:48Z

commit 279862edbd47adcf7278314d8fc10bff014bbbe7 parent 78050abed8b3a27a8cd02681e4150f9d9a5c9f09 Author: Vincent Forest Date: Mon, 28 Mar 2016 18:11:48 +0200 Document the helical_pipe geometry

Add the helical_pipe geometry to the YAML file format

2016-03-28T15:09:01Z

commit 78050abed8b3a27a8cd02681e4150f9d9a5c9f09 parent 616515bb47336481bcbf33bb655537dacddbdaba Author: Vincent Forest Date: Mon, 28 Mar 2016 17:09:01 +0200 Add the helical_pipe geometry to the YAML file format

Add the internal helical pipe mesh

2016-03-28T14:37:04Z

commit 616515bb47336481bcbf33bb655537dacddbdaba parent e3e1b6f775c011a498afa32e2a401cca3341c3e3 Author: Vincent Forest Date: Mon, 28 Mar 2016 16:37:04 +0200 Add the internal helical pipe mesh

First draft of the helicoid mesh generation routine

2016-03-28T08:22:39Z

commit e3e1b6f775c011a498afa32e2a401cca3341c3e3 parent 1d8c879137b59eeece12d58a26eeb56fefef2f80 Author: Vincent Forest Date: Mon, 28 Mar 2016 10:22:39 +0200 First draft of the helicoid mesh generation routine

Fix a misspelling in the schiff man page

2016-03-28T08:22:20Z

commit 1d8c879137b59eeece12d58a26eeb56fefef2f80 parent 743a6d2361e1540a90c128b424490ca64639ecf3 Author: Vincent Forest Date: Mon, 28 Mar 2016 10:22:20 +0200 Fix a misspelling in the schiff man page

Fix some misspellings and typos in the man pages

2016-03-24T19:32:32Z

commit 743a6d2361e1540a90c128b424490ca64639ecf3 parent 84cd957f3a5e0255ad75cf889bec785a76f21fa4 Author: Vincent Forest Date: Thu, 24 Mar 2016 20:32:32 +0100 Fix some misspellings and typos in the man pages

Document the default proba value

2016-03-24T14:45:21Z

commit 84cd957f3a5e0255ad75cf889bec785a76f21fa4 parent 5ab29f8ffab000ebc458af6234441e4915a9cb57 Author: Vincent Forest Date: Thu, 24 Mar 2016 15:45:21 +0100 Document the default proba value

Document the supershape geometry

2016-03-24T14:10:35Z

commit 5ab29f8ffab000ebc458af6234441e4915a9cb57 parent 79519f4013988ba0d38a9cff498467febbdfc4ba Author: Vincent Forest Date: Thu, 24 Mar 2016 15:10:35 +0100 Document the supershape geometry

Rename super<-|_| >shape in supershape

2016-03-24T13:11:26Z

commit 79519f4013988ba0d38a9cff498467febbdfc4ba parent 4f9640f40316e86e1a3054293e45c9de62526a2a Author: Vincent Forest Date: Thu, 24 Mar 2016 14:11:26 +0100 Rename super<-|_| >shape in supershape

Add the super_shape geometry to the YAML file format

2016-03-24T13:00:50Z

commit 4f9640f40316e86e1a3054293e45c9de62526a2a parent 63bfccee6ba5d16d5314d703f6e9378efbc3f432 Author: Vincent Forest Date: Thu, 24 Mar 2016 14:00:50 +0100 Add the super_shape geometry to the YAML file format

Fix the install target

2016-03-23T11:04:39Z

commit 63bfccee6ba5d16d5314d703f6e9378efbc3f432 parent d3a1ea70442dcc3fd74c3c82873263ba943e9692 Author: Vincent Forest Date: Wed, 23 Mar 2016 12:04:39 +0100 Fix the install target Install the GPLv3 COPYING file rather than the outdated CeCILL COPYING. files.

Fix a misspelling on the characteristic length variables

2016-03-23T11:03:56Z

commit d3a1ea70442dcc3fd74c3c82873263ba943e9692 parent 68e6e76a5e7bee22cb5f4046a95a5ffd036f309b Author: Vincent Forest Date: Wed, 23 Mar 2016 12:03:56 +0100 Fix a misspelling on the characteristic length variables

Add examples to the schiff man page

2016-03-23T10:54:16Z

commit 68e6e76a5e7bee22cb5f4046a95a5ffd036f309b parent 0f08e67c22ab94fed7ce2997f6fb35d8e55a740d Author: Vincent Forest Date: Wed, 23 Mar 2016 11:54:16 +0100 Add examples to the schiff man page

Use a more general truncated gaussian distribution

2016-03-23T10:08:38Z

commit 0f08e67c22ab94fed7ce2997f6fb35d8e55a740d parent 51ee422cf8413d3c09b157508d1c939dc3a6cd31 Author: Vincent Forest Date: Wed, 23 Mar 2016 11:08:38 +0100 Use a more general truncated gaussian distribution The min and max bounds used to check the validity of the parsed `mu' value are used to reject or not the sampled gaussian value.

Document the gaussian distribution

2016-03-23T09:58:51Z

commit 51ee422cf8413d3c09b157508d1c939dc3a6cd31 parent 2f167ea14d8d18716a0f35b1687438f57843c266 Author: Vincent Forest Date: Wed, 23 Mar 2016 10:58:51 +0100 Document the gaussian distribution

Add the gaussian parameter distribution

2016-03-23T09:38:45Z

commit 2f167ea14d8d18716a0f35b1687438f57843c266 parent 4a0eadada0928281eb8a9bcb5d47037f8ecc9c8f Author: Vincent Forest Date: Wed, 23 Mar 2016 10:38:45 +0100 Add the gaussian parameter distribution

Rename the zeta lognormal attribute in mu

2016-03-22T15:35:22Z

commit 4a0eadada0928281eb8a9bcb5d47037f8ecc9c8f parent ae06330ea8bbb88d6ac48d94eba4df92f96cc1b9 Author: Vincent Forest Date: Tue, 22 Mar 2016 16:35:22 +0100 Rename the zeta lognormal attribute in mu

Minor update of the schiff-output man mage

2016-03-22T14:56:14Z

commit ae06330ea8bbb88d6ac48d94eba4df92f96cc1b9 parent 2236f0907c6e67c7483744a11707e14c25bf7ae7 Author: Vincent Forest Date: Tue, 22 Mar 2016 15:56:14 +0100 Minor update of the schiff-output man mage Document the unit of the cross-section values.

Document the ellipsoid as sphere distribution

2016-03-22T14:30:44Z

commit 2236f0907c6e67c7483744a11707e14c25bf7ae7 parent 18160a766ef033d06df92467857fc86235dcdbf4 Author: Vincent Forest Date: Tue, 22 Mar 2016 15:30:44 +0100 Document the ellipsoid as sphere distribution Minor refactoring of the schiff-geometry man page.

Update the ellipsoid distribution

2016-03-22T13:29:59Z

commit 18160a766ef033d06df92467857fc86235dcdbf4 parent 668eedbee627f6d490e4345d0f85573f56f37a05 Author: Vincent Forest Date: Tue, 22 Mar 2016 14:29:59 +0100 Update the ellipsoid distribution The "a" and "b" semi-principal axis are now equals. Add the ellipsoid distribution with an equivalent sphere. The radius of the equivalent sphere follows a given distribution and the a/c ratio is fixed.

Minor updates of the schiff[-geometry] man pages

2016-03-22T09:39:20Z

commit 668eedbee627f6d490e4345d0f85573f56f37a05 parent 08e59544d03a16367f588645038b26e737559269 Author: Vincent Forest Date: Tue, 22 Mar 2016 10:39:20 +0100 Minor updates of the schiff[-geometry] man pages

Simplify the test_sschiff_cylinder script

2016-03-21T16:11:34Z

commit 08e59544d03a16367f588645038b26e737559269 parent 81d8ce44788de8a8b4fc45b5af9c82ce1e6e867f Author: Vincent Forest Date: Mon, 21 Mar 2016 17:11:34 +0100 Simplify the test_sschiff_cylinder script Do not regroup the cross_sections in one file and do not split the inverse cumulative phase functions.

Add the test_schiff_sphere test script

2016-03-21T15:33:54Z

commit 81d8ce44788de8a8b4fc45b5af9c82ce1e6e867f parent cb39be62c3f8146ecb94c7b71f08fac8f965c57f Author: Vincent Forest Date: Mon, 21 Mar 2016 16:33:54 +0100 Add the test_schiff_sphere test script

Apply the GPL v3.0 license rather than the CeCILL

2016-03-21T11:47:03Z

commit cb39be62c3f8146ecb94c7b71f08fac8f965c57f parent dc45d44a429fbdf7277bed8193b914764ea01d4e Author: Vincent Forest Date: Mon, 21 Mar 2016 12:47:03 +0100 Apply the GPL v3.0 license rather than the CeCILL

Document the ellipsoid distribution in the schiff-geometry man-page

2016-03-21T09:01:57Z

commit dc45d44a429fbdf7277bed8193b914764ea01d4e parent 42b1dad5561fc2cc87954113f25a3699efe4ab09 Author: Vincent Forest Date: Mon, 21 Mar 2016 10:01:57 +0100 Document the ellipsoid distribution in the schiff-geometry man-page

Check that the -d and -g option is not 0

2016-03-20T15:45:06Z

commit 42b1dad5561fc2cc87954113f25a3699efe4ab09 parent 139f83d5c296b191100cd199b553f03636273539 Author: Vincent Forest Date: Sun, 20 Mar 2016 16:45:06 +0100 Check that the -d and -g option is not 0 The number of directions per geometry and the number of sampled geometries cannot be null. The schiff program previously notified a not very explicit "integration error". Now, an error message is reported on the parsing of the invalid option.

Check the range of the parsed YAML values

2016-03-20T15:25:15Z

commit 139f83d5c296b191100cd199b553f03636273539 parent e61eb3a158492092793a2d0734da0cf707ae2d65 Author: Vincent Forest Date: Sun, 20 Mar 2016 16:25:15 +0100 Check the range of the parsed YAML values

Add the ellipsoid distribution to the YAML fileformat

2016-03-20T13:14:05Z

commit e61eb3a158492092793a2d0734da0cf707ae2d65 parent f2f579aa001224a42e8f2c5c442fd7855e536c8d Author: Vincent Forest Date: Sun, 20 Mar 2016 14:14:05 +0100 Add the ellipsoid distribution to the YAML fileformat

Internally add the ellipsoid distribution

2016-03-20T09:53:33Z

commit f2f579aa001224a42e8f2c5c442fd7855e536c8d parent 5a91dc71a08d1b4f6d6eb01fe451edebd0877241 Author: Vincent Forest Date: Sun, 20 Mar 2016 10:53:33 +0100 Internally add the ellipsoid distribution Add the support of the ellipsoid schiff geometry (not debugged yet). This distribution is not handled by the schiff-geometry YAML file format.

Add a test_schiff_cylinder bash script test

2016-03-19T20:20:49Z

commit 5a91dc71a08d1b4f6d6eb01fe451edebd0877241 parent d4adde28c0335443cac2339b3e1e894383ae2f13 Author: Vincent Forest Date: Sat, 19 Mar 2016 21:20:49 +0100 Add a test_schiff_cylinder bash script test This test is added only if the host allows its execution.

Rewrite some parts of the man-pages

2016-03-19T14:24:52Z

commit d4adde28c0335443cac2339b3e1e894383ae2f13 parent 870ed23812ade74e2b34bf4d9754397872c0d179 Author: Vincent Forest Date: Sat, 19 Mar 2016 15:24:52 +0100 Rewrite some parts of the man-pages Move the man-pages from man<1|5> doc sub-directories to the doc.

Fix typo in the schiff-output man page

2016-03-18T18:32:12Z

commit 870ed23812ade74e2b34bf4d9754397872c0d179 parent 2477b0b901d47d8e5b4b3502430353943a954ba0 Author: Vincent Forest Date: Fri, 18 Mar 2016 19:32:12 +0100 Fix typo in the schiff-output man page

Add the -A option

2016-03-18T18:29:10Z

commit 2477b0b901d47d8e5b4b3502430353943a954ba0 parent f7ce89531da8269e8f12108300b1d8ad1074bba1 Author: Vincent Forest Date: Fri, 18 Mar 2016 19:29:10 +0100 Add the -A option Define the number of inverse cumulative phase function values.

Remove the duplicated schiff-geometry man page

2016-03-18T14:13:23Z

commit f7ce89531da8269e8f12108300b1d8ad1074bba1 parent 5213a1acdc9f5bda48043347d27fc3440f328aba Author: Vincent Forest Date: Fri, 18 Mar 2016 15:13:23 +0100 Remove the duplicated schiff-geometry man page

Install the manual pages in their right directories

2016-03-18T13:48:21Z

commit 5213a1acdc9f5bda48043347d27fc3440f328aba parent 6998f7cade78ade3b79bd381a6dfa7ee1d6c83f0 Author: Vincent Forest Date: Fri, 18 Mar 2016 14:48:21 +0100 Install the manual pages in their right directories

Update the schiff-geometry man page

2016-03-18T13:34:22Z

commit 6998f7cade78ade3b79bd381a6dfa7ee1d6c83f0 parent 008cace40d1b8d6cc3a565027f847d39dc61a89f Author: Vincent Forest Date: Fri, 18 Mar 2016 14:34:22 +0100 Update the schiff-geometry man page

Minor update of the schiff-output man page

2016-03-18T13:24:31Z

commit 008cace40d1b8d6cc3a565027f847d39dc61a89f parent cd9cfb175fd8e9c71c95b3ffa38665d1e67bd2ae Author: Vincent Forest Date: Fri, 18 Mar 2016 14:24:31 +0100 Minor update of the schiff-output man page

Small update of the schiff man page

2016-03-18T13:14:11Z

commit cd9cfb175fd8e9c71c95b3ffa38665d1e67bd2ae parent 88146d2adf7a0a4ae16fa63e8aff3ff33771a159 Author: Vincent Forest Date: Fri, 18 Mar 2016 14:14:11 +0100 Small update of the schiff man page Fix some typos and misspellings. Replace the "micro-organism" term by the more general "soft-particle" expression.

Finalise the schiff-geometry man page

2016-03-18T11:49:29Z

commit 88146d2adf7a0a4ae16fa63e8aff3ff33771a159 parent c37065c6d4877210c1d6f895e3aea293d91e2f88 Author: Vincent Forest Date: Fri, 18 Mar 2016 12:49:29 +0100 Finalise the schiff-geometry man page

Add man-pages to the install target

2016-03-17T20:20:15Z

commit c37065c6d4877210c1d6f895e3aea293d91e2f88 parent 2a9af03cd52e6f4a6fee4f5a7a73f30753155e4d Author: Vincent Forest Date: Thu, 17 Mar 2016 21:20:15 +0100 Add man-pages to the install target

First draft of the man page on YAML geometry fileformat

2016-03-17T20:16:06Z

commit 2a9af03cd52e6f4a6fee4f5a7a73f30753155e4d parent 13ce6042d4a41fb302a3308076685f95f005f89a Author: Vincent Forest Date: Thu, 17 Mar 2016 21:16:06 +0100 First draft of the man page on YAML geometry fileformat Move the manual pages to the doc directory.

Remove empty line from the schiff man page

2016-03-16T17:00:48Z

commit 13ce6042d4a41fb302a3308076685f95f005f89a parent 3c71cceb05ea6bb4850e7a0612030946d192e61f Author: Vincent Forest Date: Wed, 16 Mar 2016 18:00:48 +0100 Remove empty line from the schiff man page

Begin the man page of the distribution YAML fileformat

2016-03-16T16:44:45Z

commit 3c71cceb05ea6bb4850e7a0612030946d192e61f parent ba3a5f0d468b78b482c7f06b5bf240dc0746ed33 Author: Vincent Forest Date: Wed, 16 Mar 2016 17:44:45 +0100 Begin the man page of the distribution YAML fileformat

Add man page of the shiff output format

2016-03-16T16:44:25Z

commit ba3a5f0d468b78b482c7f06b5bf240dc0746ed33 parent e18fe61bb43466859c56b962aa760e1f31e680d1 Author: Vincent Forest Date: Wed, 16 Mar 2016 17:44:25 +0100 Add man page of the shiff output format

Add man page of the schiff program

2016-03-16T16:44:04Z

commit e18fe61bb43466859c56b962aa760e1f31e680d1 parent 9c838243d24be5951ca4223d0088db365bc2d90b Author: Vincent Forest Date: Wed, 16 Mar 2016 17:44:04 +0100 Add man page of the schiff program

Update default value and reduce help doc

2016-03-16T16:43:17Z

commit 9c838243d24be5951ca4223d0088db365bc2d90b parent 096dd4482775ec2698a415909ccf0e79523941c9 Author: Vincent Forest Date: Wed, 16 Mar 2016 17:43:17 +0100 Update default value and reduce help doc

Output the inverse cumulative phase function

2016-03-15T15:40:32Z

commit 096dd4482775ec2698a415909ccf0e79523941c9 parent a2d8927486f97b3a6c9cba491701776c18b7e47a Author: Vincent Forest Date: Tue, 15 Mar 2016 16:40:32 +0100 Output the inverse cumulative phase function

Improve the geometry distribution YAML file format

2016-03-14T13:31:27Z

commit a2d8927486f97b3a6c9cba491701776c18b7e47a parent 4c97784d48b341ca409e1c12892b4b8b742daa5f Author: Vincent Forest Date: Mon, 14 Mar 2016 14:31:27 +0100 Improve the geometry distribution YAML file format A single YAML mapping node can be used to declare a single geometry distribution.

Add comments

2016-03-14T08:10:29Z

commit 4c97784d48b341ca409e1c12892b4b8b742daa5f parent d3148f07ab4939da6ba21a9bdf43e16b37099dae Author: Vincent Forest Date: Mon, 14 Mar 2016 09:10:29 +0100 Add comments

Finalize the YAML parsing of geometry distributions

2016-03-11T15:29:15Z

commit d3148f07ab4939da6ba21a9bdf43e16b37099dae parent 936a8b08f826d6d5f6313d6fe7de96596aa12de3 Author: Vincent Forest Date: Fri, 11 Mar 2016 16:29:15 +0100 Finalize the YAML parsing of geometry distributions Use the updated Star-Schiff API. Remove outdated documentations of the command help. Handle multiple geometry distributions.

Parse the YAML sphere and parameter distributions

2016-03-10T15:29:36Z

commit 936a8b08f826d6d5f6313d6fe7de96596aa12de3 parent 75cb616b0a705844cbb55e3be5c64dcc77eb6763 Author: Vincent Forest Date: Thu, 10 Mar 2016 16:29:36 +0100 Parse the YAML sphere and parameter distributions

Parse the YAML cylinder distribution

2016-03-09T07:34:27Z

commit 75cb616b0a705844cbb55e3be5c64dcc77eb6763 parent c5c174672604ec776595ac4cccd8ba4e628675c2 Author: Vincent Forest Date: Wed, 9 Mar 2016 08:34:27 +0100 Parse the YAML cylinder distribution Do not parse the cylinder attribute distribution yet.

Begin the parsing of the YAML geometry distributions

2016-03-08T14:53:51Z

commit c5c174672604ec776595ac4cccd8ba4e628675c2 parent f97d1846cfd9dc83df5661283ed969767540197c Author: Vincent Forest Date: Tue, 8 Mar 2016 15:53:51 +0100 Begin the parsing of the YAML geometry distributions

Add a dependency to the LibYAML devel

2016-03-07T13:45:20Z

commit f97d1846cfd9dc83df5661283ed969767540197c parent 86395d904619f0eca3ba9c6bd73e93f8fcc03aaa Author: Vincent Forest Date: Mon, 7 Mar 2016 14:45:20 +0100 Add a dependency to the LibYAML devel Add a LibYAML cmake module and use it to look for the LibYAML devel.

Fix the test on optical properties

2016-02-11T15:51:54Z

commit 86395d904619f0eca3ba9c6bd73e93f8fcc03aaa parent e6941a1da4a8516d3a822e24f9eec12f9bfcb462 Author: Vincent Forest Date: Thu, 11 Feb 2016 16:51:54 +0100 Fix the test on optical properties Optical properties can be equal to zero.

Fix the histogram sampling

2016-02-09T10:25:12Z

commit e6941a1da4a8516d3a822e24f9eec12f9bfcb462 parent d5517ae72e590f20ce302db9cdd19f5811571e91 Author: Vincent Forest Date: Tue, 9 Feb 2016 11:25:12 +0100 Fix the histogram sampling The comparator of histogram values was wrongly defined leading to invalid memory read.

Minor message fix

2016-01-27T20:53:09Z

commit d5517ae72e590f20ce302db9cdd19f5811571e91 parent b60802d96b0a5acb97622a128bfaab34b9e2eda9 Author: Vincent Forest Date: Wed, 27 Jan 2016 21:53:09 +0100 Minor message fix

Use the new Star-Schiff API that handle multi-threading

2015-11-25T13:42:37Z

commit b60802d96b0a5acb97622a128bfaab34b9e2eda9 parent bb602b656fff49e02245027368b967020be316f7 Author: Vincent Forest Date: Wed, 25 Nov 2015 14:42:37 +0100 Use the new Star-Schiff API that handle multi-threading Add the "-n NTHREADS" option that defines an hint on the number of threads to use by the Schiff integration.

Fix a cast pointer issue

2015-11-24T10:25:34Z

commit bb602b656fff49e02245027368b967020be316f7 parent 900a99d42cbd78861a10a3698aac0de8c08a5296 Author: Vincent Forest Date: Tue, 24 Nov 2015 11:25:34 +0100 Fix a cast pointer issue We assumed that sizeof(unsigned long) == sizeof(size_t).

Fix an issue in the parsing of the supershape distribution

2015-11-24T10:13:41Z

commit 900a99d42cbd78861a10a3698aac0de8c08a5296 parent 045f481d02b694fc64747d4aea61628ddfa946b2 Author: Vincent Forest Date: Tue, 24 Nov 2015 11:13:41 +0100 Fix an issue in the parsing of the supershape distribution An empty supershape description leads to memory corruptions.

Improve the search of the optical properties

2015-11-24T10:06:21Z

commit 045f481d02b694fc64747d4aea61628ddfa946b2 parent 83054901a0cecd3849f6184144ed82396c1b9401 Author: Vincent Forest Date: Tue, 24 Nov 2015 11:06:21 +0100 Improve the search of the optical properties Use binary search rather than linear search to retrieve the optical properties of a given wavelength.

Minor update of the parsing of optical properties

2015-11-24T09:42:21Z

commit 83054901a0cecd3849f6184144ed82396c1b9401 parent 2a684b4d4394e01bf43b449624951c6d0300a383 Author: Vincent Forest Date: Tue, 24 Nov 2015 10:42:21 +0100 Minor update of the parsing of optical properties Make more robust the parsing of empty lines.

Rm a useless warn msg in the parsing of histograms

2015-11-24T09:39:25Z

commit 2a684b4d4394e01bf43b449624951c6d0300a383 parent b1bcebf835ca9c010527dc192a9ed083ce31c7cc Author: Vincent Forest Date: Tue, 24 Nov 2015 10:39:25 +0100 Rm a useless warn msg in the parsing of histograms When all histogram entries were parsed, a message was printed if the stream was not empty. This is a bad design choice as well as useless and boring.

Fix the parsing of the super shape distribution

2015-11-24T09:37:53Z

commit b1bcebf835ca9c010527dc192a9ed083ce31c7cc parent 6a1a73b2c0161bf7bd456df97c584b40827bbf7b Author: Vincent Forest Date: Tue, 24 Nov 2015 10:37:53 +0100 Fix the parsing of the super shape distribution A super-shape distribution with empty superformula may lead to memory corruption. .

Fix issues in the parsing of histograms

2015-11-23T20:35:06Z

commit 6a1a73b2c0161bf7bd456df97c584b40827bbf7b parent ba84ffade367374cc94abaad6409096e6abf733e Author: Vincent Forest Date: Mon, 23 Nov 2015 21:35:06 +0100 Fix issues in the parsing of histograms

Update the histogram file format

2015-11-23T18:30:59Z

commit ba84ffade367374cc94abaad6409096e6abf733e parent 348cff3810baae116c46565b33881ded31c87ad2 Author: Vincent Forest Date: Mon, 23 Nov 2015 19:30:59 +0100 Update the histogram file format

Update the super-shape distribution

2015-11-23T14:47:11Z

commit 348cff3810baae116c46565b33881ded31c87ad2 parent 3aa6422c669636bdf3bf4bf304d3e6ea357826eb Author: Vincent Forest Date: Mon, 23 Nov 2015 15:47:11 +0100 Update the super-shape distribution The distribution of the whole set of attributes of the super shape are now controllable.

Use strtok_s rather strtok_r with CL

2015-11-23T13:15:34Z

commit 3aa6422c669636bdf3bf4bf304d3e6ea357826eb parent 8dc79ed97b2cb6fb26a5916c8b16a95455fe58f1 Author: Vincent Forest Date: Mon, 23 Nov 2015 14:15:34 +0100 Use strtok_s rather strtok_r with CL Fix typos in the help message of the command.

Update the histogram distribution

2015-11-23T11:26:33Z

commit 8dc79ed97b2cb6fb26a5916c8b16a95455fe58f1 parent ac25ce9e4c2a482bad8eec78acd616263d27490f Author: Vincent Forest Date: Mon, 23 Nov 2015 12:26:33 +0100 Update the histogram distribution Replace the histogram of discreet probabilities by an histogram of probabilities to sample an interval. Values inside the interval are retrieved by a linear interpolation of interval boundaries.

Add the "cylinder as sphere" distribution

2015-11-20T13:25:53Z

commit ac25ce9e4c2a482bad8eec78acd616263d27490f parent 4e2d6a0d2e499884a3fb25d97afd8fa85def6282 Author: Vincent Forest Date: Fri, 20 Nov 2015 14:25:53 +0100 Add the "cylinder as sphere" distribution Cylinders have a constant aspect ratio and their size is defined by a sphere whose radius is controlled by a user defined distribution. Improve the command documentation: document the parameter distribution and add examples.

Major update of the geometry distribution

2015-11-19T15:29:55Z

commit 4e2d6a0d2e499884a3fb25d97afd8fa85def6282 parent 7d6f14f13c3388d420cd674380d22e4003be4d68 Author: Vincent Forest Date: Thu, 19 Nov 2015 16:29:55 +0100 Major update of the geometry distribution Make configurable the distribution of the geometry parameter. The following 3 distributions are currently supported: constant, lognormal and histogram.

Fix the link on Unix

2015-11-18T17:08:50Z

commit 7d6f14f13c3388d420cd674380d22e4003be4d68 parent f36136c46731f15bb103a119881e0242283b4791 Author: Vincent Forest Date: Wed, 18 Nov 2015 18:08:50 +0100 Fix the link on Unix Link against MuslGetopt only on MSVC.

Update the "no optical property" message on Windows

2015-11-18T16:51:38Z

commit f36136c46731f15bb103a119881e0242283b4791 parent 7efd6868325dab3912eb3405d8f226c857a8e0d9 Author: Vincent Forest Date: Wed, 18 Nov 2015 17:51:38 +0100 Update the "no optical property" message on Windows Print how to stop the input on windows, i.e. ^Z rather than ^D on Unix.

Fix compilation errors and warnings on CL

2015-11-18T16:43:59Z

commit 7efd6868325dab3912eb3405d8f226c857a8e0d9 parent 3cc74915ffcf5f6bdb9cf56931fb6f040158cf47 Author: Vincent Forest Date: Wed, 18 Nov 2015 17:43:59 +0100 Fix compilation errors and warnings on CL

Add the schiff_streamline internal data structure

2015-11-17T10:21:52Z

commit 3cc74915ffcf5f6bdb9cf56931fb6f040158cf47 parent 2bfb5407854d613eb01e7a7b7ec5f2de7a9cbcfc Author: Vincent Forest Date: Tue, 17 Nov 2015 11:21:52 +0100 Add the schiff_streamline internal data structure Factorise the streaming of lines.

Improve the CLI interface and add the -q option

2015-11-13T10:11:11Z

commit 2bfb5407854d613eb01e7a7b7ec5f2de7a9cbcfc parent 05f060f5c27ff4fe9b690eda69c991dc88593844 Author: Vincent Forest Date: Fri, 13 Nov 2015 11:11:11 +0100 Improve the CLI interface and add the -q option Print an helper message when no optical property FILE is submitted, excepted if the "-q" option is defined ("q" means for quiet).

Fix a memory access error

2015-11-09T15:36:42Z

commit 05f060f5c27ff4fe9b690eda69c991dc88593844 parent fdf19b6be2292aecf595a39ffbb3a3cf921857f2 Author: Vincent Forest Date: Mon, 9 Nov 2015 16:36:42 +0100 Fix a memory access error The thetas/phis mesh arrays were released even though they were not initialised leading to memory corruption.